Major: Industrial Engineering and Operations Management
Thesis Title: Optimization Models for Survival Analysis to
Identify Key Gene Sets in Cancer
2009-2014B.S., İzmir University of Economics, İzmir,
Turkey.
Major: Industrial Engineering
Research Interests
Machine Learning
Computational Biology
Genomic Data Analysis
Optimization
Publications
Dereli, O., Oğuz, C., Gönen., M. (2020). A Clustering
algorithm for survival analysis of cancer patients using gene set
information (Under review).
Dereli, O., Oğuz, C., Gönen., M. (2019). A Multitask Multiple
Kernel Learning Algorithm for Survival Analysis with Application to
Cancer Biology. In Proceedings of the 36th International
Conference on Machine Learning, volume 97, pages 1576–1585. PMLR.
Dereli, O., Oğuz, C., Gönen., M. (2019). Path2Surv:
Pathway/gene set-based survival analysis using multiple kernel
learning. Bioinformatics, 35(24):5137–5145.
Presentations
2019 A Multitask Multiple Kernel Learning Algorithm for Survival
Analysis with Application to Cancer Biology, 36th International
Conference on Machine Learning (ICML 2019), Long Beach, CA, USA.
2019 Identification of Key gene-sets in Cancer, Sabancı University
Workshop on Business Analytics, İstanbul, Turkey.
2019 Identification of Key gene-sets in Cancer, Ph.D. Students
Colloquium on Operations Research and Industrial Engineering,
Eskişehir, Turkey.
2018 Path2Surv: Pathway/gene set-based survival analysis using
multiple kernel learning, European Conference on Computational
Biology (ECCB 2018), Athens, Greece.
Grants
2014–2020 Graduate scholarship, Koç University.
2014–2019 Ph.D. scholarship (2211), Scientific and Technological
Research Council of Turkey (TÜBİTAK).
2014–2009 Bachelor’s scholarship, İzmir University of Economics.
