Publication List

  • Li W., Liu W., Kakoki A., Wang R., Adebali O., Sancar A., Jiang Y. (2019)

    Differential damage and repair of anti-cancer drug cisplatin induced DNA-adducts across mouse organs. Journal of Biological Chemistry

  • Yimit A., Adebali O., Sancar A.*, Jiang Y.* (2019)

    Differential damage and repair of anti-cancer drug cisplatin induced DNA-adducts across mouse organs. Nature Communications, 10(1), 309

  • Hu J., Li W., Adebali O., Yang Y., Oztas O., Selby C.P., Sancar A.* (2019)

    Genome-wide mapping of nucleotide excision repair with XR-seq. Nature Protocols, 14(1), 248-282.

  • Yang Y., Adebali O., Wu G., Selby C.P., Rashid N., Hogenesch J.B., Sancar A.* (2018)

    Cisplatin-DNA adduct repair of transcribed genes is controlled by two circadian programs in mouse tissues. PNAS, 21(115), E4777-E4785.

  • Oztas O., Selby C.P., Sancar A.*, Adebali O.* (2018)

    Genome-wide Excision Repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns. Nature Communications, 9(1), 1503.

  • Li W., Adebali O., Yang Y., Selby C.P., Sancar A.* (2018)

    Single-nucleotide resolution dynamic repair maps of UV damage in Saccharomyces cerevisiae genome. PNAS, 115(15), E3408-E3415.

  • Adebali O., Sancar A.*, Selby C.P.* (2017)

    Mfd translocase is necessary and sufficient for transcription-coupled repair in Escherichia coli. The Journal of Biological Chemistry, 292(45), 18386-18391.

  • Hu J., Selby C.P., Adar S., Adebali O., Sancar A.* (2017)

    Molecular mechanism of DNA excision repair and excision repair maps of the human and E. coli genomes. The Journal of Biological Chemistry, 292(38), 15588-15597.

  • Hu J.#, Adebali O.#, Adar S., Sancar A.* (2017)

    Dynamic maps of UV damage formation and repair. PNAS, 114(26), 6758-6763.

  • Li W., Hu J., Adebali O., Adar S., Yang Y., Chiou Y., Sancar A.* (2017)

    Human genome-wide repair map of DNA damage caused by the cigarette smoke carcinogen benzo[a]pyrene. PNAS, 114(26), 6752-6757.

  • Adebali O., Petukh M., Reznik A., Tishkov A., Upadhyay A., Zhulin I.B.* (2017)

    Class III histidine kinases: a recently accessorized kinase domain in putative modulators of type IV pili based motility. Journal of Bacteriology, 199(18), e00218-17.

  • Adebali O., Chiou Y., Hu J., Sancar A.*, Selby C.P.* (2017)

    Genome-wide transcription-coupled repair in Escherichia coli is mediated by the Mfd translocase. PNAS (Featured: From the Cover), 114(11), E2116-E2125.

  • Adebali O.*, Zhulin I.B. (2016)

    Aquerium: a web application for comparative exploration of domain-based protein occurrences on the taxonomically clustered genome tree. Proteins, 85(1), 72-77.

  • Upadhyay A.A., Fleetwood A.D., Adebali O., Finn R., Zhulin I.B.* (2016)

    Cache domains are dominant extracellular sensors for signal transduction in prokaryotes. PLOS Computational Biology , 12(4).

  • Adebali O., Reznik A.O., Ory D.S., Zhulin, I.B.* (2016)

    Establishing the precise evolutionary history of a gene improves predicting disease-causing missense mutations. Genetics in Medicine, 18(10), 1029-1036.

  • Adebali O.*, Ortega D.R., Zhulin I.B.* (2015)

    CDvist: a webserver for identification and visualization of conserved domains in protein sequences. Bioinformatics, 31(9), 1475–1477.

*Corresponding author | #Equal contribution